Basic Information
Locus ID:
nbisL1-mrna-18408
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 7740525 | 7741751 | + | nbisL1-mrna-18408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 45,545.59 Da | 44.16 | 113.50 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 3.0328E-22 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 6.0E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 378 | 6.17E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 79 | 1.41E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 394 | 3.2E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 6.1E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 75 | 1.3E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 82 | 33.535812 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_034915378.1 | E3 ubiquitin-protein ligase PUB23-like [Populus alba] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QNQ5 | RING-type E3 ubiquitin transferase OS=Populus alba OX=43335 GN=D5086_0000062910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology