Basic Information
Locus ID:
nbisL1-mrna-18405
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein ATL79-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 35917369 | 35918946 | - | nbisL1-mrna-18405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 30,060.84 Da | 63.98 | 79.60 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 188 | 231 | 4.57187E-16 | - |
| Pfam | PF13639 | Ring finger domain | 188 | 231 | 1.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 188 | 237 | 1.31E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 235 | 4.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 230 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 231 | 12.459772 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47610.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002518964.2 | RING-H2 finger protein ATL79 [Ricinus communis] | 0 |
| Q9FGJ6 | RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1 | 0 | |
| TrEMBL | B9RYZ5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15908, jg4341, jg4453 |
| Arecaceae | Cocos nucifera | 4 | COCNU_07G006340, COCNU_09G002740, COCNU_10G004430 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103708500, gene-LOC103712211, gene-LOC103721766 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17245.1, AT5G47610.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001049m.g.v1.0, Thhalv10026467m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16940.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g064190.2N, BniB04g010110.2N, BniB07g022650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0694 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g03320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1647 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006676 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.152, AH07.2802, BH07.2613, BH07.47, CH03.4781 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0139120, gene-QOZ80_2BG0152280 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0542110.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_019146, gene-QYE76_024024, gene-QYE76_067151 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os02g01700.1, LOC_Os02g43120.1, LOC_Os03g45230.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G006400, gene-BS78_04G211800 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G006360, Chr0G010450, Chr0G010760, Chr15G008070 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G071000, Tel6E01G452600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG002770, gene_TRIDC6AG036860 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS6A02G023700.1.cds1, TraesCS6A02G239000.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb229500_P001, Zm00001eb248760_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22447, nbis-gene-52066, nbis-gene-52316 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12046, Zma_g14813, Zma_g16764 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.4 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18405 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8919 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8712 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000007l.196 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018431 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23338 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10512 |
| Salicaceae | Populus euphratica | 2 | populus_peu00185, populus_peu17274 |