Basic Information
Locus ID:
nbisL1-mrna-1838
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 2151762 | 2156157 | - | nbisL1-mrna-1838 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 71,971.06 Da | 36.24 | 82.65 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 393 | 622 | 1.2912E-41 | - |
| CDD | cd10320 | RGL4_N | 28 | 242 | 3.4683E-64 | - |
| CDD | cd10316 | RGL4_M | 282 | 381 | 1.03241E-32 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 306 | 378 | 1.6E-23 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 21 | 151 | 8.7E-58 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 391 | 621 | 4.2E-47 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 15 | 242 | 1.16E-9 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 388 | 622 | 8.5E-39 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 279 | 378 | 3.53E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 279 | 378 | 2.5E-5 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 6 | 261 | 3.5E-15 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_012081708.1 | probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas] | 0 |
| TrEMBL | A0A067K103 | rhamnogalacturonan endolyase OS=Jatropha curcas OX=180498 GN=JCGZ_18737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology