Basic Information
Locus ID:
nbisL1-mrna-18378
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 8789664 | 8792373 | + | nbisL1-mrna-18378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 94,389.49 Da | 40.91 | 85.08 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 446 | 708 | 1.92896E-96 | - |
| Pfam | PF12819 | Malectin-like domain | 218 | 350 | 1.4E-13 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 445 | 712 | 3.9E-48 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 51 | 210 | 2.5E-12 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 417 | 712 | 2.7E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 424 | 516 | 3.0E-29 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 207 | 350 | 5.1E-16 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 48 | 206 | 8.0E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 517 | 736 | 8.5E-62 | - |
| SMART | SM00220 | serkin_6 | 440 | 716 | 2.5E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 440 | 714 | 35.085548 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 446 | 469 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 561 | 573 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39000.1 | Malectin/receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_021670697.1 | receptor-like protein kinase FERONIA [Hevea brasiliensis] | 0 |
| Q9FID8 | Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2C9WJC2 | Protein kinase domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_01G094800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0413 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023687 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_6_RagTag.373, evm.TU.Scaffold_6_RagTag.389 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15255 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-317 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.100 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006847 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18378, nbisL1-mrna-21417, nbisL1-mrna-21418 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17235, nbisL1-mrna-22174 |