Basic Information
Locus ID:
nbisL1-mrna-1837
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5579670 | 5590316 | + | nbisL1-mrna-1837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 145,066.39 Da | 39.37 | 80.72 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 921 | 954 | 0.0024 | IPR001680 |
| Pfam | PF07651 | ANTH domain | 1222 | 1279 | 3.6E-8 | IPR011417 |
| Pfam | PF00400 | WD domain, G-beta repeat | 459 | 492 | 2.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 838 | 1102 | 2.01E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 353 | 668 | 3.63E-40 | IPR036322 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 1184 | 1280 | 1.67E-11 | IPR008942 |
| Gene3D | G3DSA:2.130.10.10 | - | 839 | 1110 | 3.2E-28 | IPR015943 |
| Gene3D | G3DSA:1.25.40.90 | - | 1220 | 1281 | 8.6E-8 | IPR008942 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 548 | 1.3E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 549 | 698 | 1.6E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 452 | 492 | 4.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 869 | 80.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 446 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 915 | 954 | 5.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 912 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 669 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 66.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.4E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.9E-15 | IPR006595 |
| SMART | SM00273 | enth_2 | 1181 | 1286 | 8.1E-4 | IPR013809 |
| SMART | SM00320 | WD40_4 | 1006 | 1047 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 582 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 0.82 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.799997 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 459 | 492 | 9.019239 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.923718 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 922 | 956 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 922 | 963 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 492 | 10.742378 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_020225685.1 | topless-related protein 4 isoform X1 [Cajanus cajan] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0HJQ5 | Topless-related protein 4-like OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR04172 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology