Basic Information
Locus ID:
nbisL1-mrna-1837
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15397340 | 15407217 | + | nbisL1-mrna-1837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 97,153.93 Da | 44.86 | 85.24 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 584 | 864 | 8.86882E-93 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 353 | 377 | 8.7E-7 | - |
| Pfam | PF00069 | Protein kinase domain | 579 | 860 | 1.2E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 553 | 863 | 1.21E-78 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 221 | 416 | 4.84E-22 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 541 | 664 | 1.9E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 665 | 871 | 5.2E-55 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 181 | 427 | 7.0E-29 | IPR009091 |
| SMART | SM00220 | serkin_6 | 578 | 867 | 2.0E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 578 | 866 | 40.371662 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 710 | 722 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 584 | 606 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_039024647.1 | serine/threonine-protein kinase-like protein CCR4 [Hibiscus syriacus] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2YS63 | Serine/threonine-protein kinase-like protein CCR4 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00301 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology