Basic Information
Locus ID:
nbisL1-mrna-18353
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000107F_pilon | 1379578 | 1381642 | - | nbisL1-mrna-18353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 21,769.37 Da | 34.11 | 76.65 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 9 | 197 | 7.8E-61 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 102 | 197 | 1.28E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 106 | 197 | 1.0E-28 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 111 | 197 | 16.806005 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_002302075.1 | auxin-induced protein AUX28 [Populus trichocarpa] | 0 |
| P13089 | Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835TFA1 | Auxin-responsive protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf02G0037400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology