Basic Information
Locus ID:
nbisL1-mrna-18330
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Domain of unknown function (DUF569)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 1673190 | 1675638 | - | nbisL1-mrna-18330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 52,517.55 Da | 51.52 | 74.40 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 144 | 1.4E-59 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 170 | 310 | 1.6E-72 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 174 | 315 | 8.63E-23 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 5 | 146 | 2.22E-22 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 178 | 295 | 5.5E-16 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 9 | 146 | 6.1E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 359 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_024454864.2 | uncharacterized protein LOC7494585 isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2K2ATX1 | DUF569 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G130200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology