Basic Information
Locus ID:
nbisL1-mrna-1833
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5618941 | 5621728 | - | nbisL1-mrna-1833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 47,662.93 Da | 38.07 | 91.53 | -0.07 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26600.1 | Glycosyl hydrolase superfamily protein. | 0 |
| RefSeq | XP_021657920.1 | glucan endo-1,3-beta-glucosidase 11-like [Hevea brasiliensis] | 0 |
| Q8L868 | Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana OX=3702 GN=At1g32860 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2NH04 | glucan endo-1,3-beta-D-glucosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13500, jg18240, jg31698 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26207, gene_8972 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010570, Ah014322 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g194130, BVRB_9g219580 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11571, Sbi_jg25662, Sbi_jg46512, Sbi_jg9501 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19129, Seu_jg20821 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005170, GOSA_00010979 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42006, Sgl46782, Sgl55921, Sgl61928 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010950, gene:ENSEOMG00000016929 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7BG0009870, CQ.Regalona.r1.8AG0022160 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30254980 |
| Apiaceae | Apium graveolens | 2 | Ag10G01885, AgUnG00265 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G016870, scaffold012863G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697703, gene-LOC103708738, gene-LOC120108138 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2489.V1.1, AsparagusV1_08.725.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G21044, Ftri18G33186, Ftri7G12347, Ftri8G33421 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26600.1, AT3G15800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002341m.g.v1.0, Thhalv10020865m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g14120.v2.2, Sp4g09380.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g049070.2N, BniB07g053940.2N, BniB08g032510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0316, Ceq06G0609 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0327, Cgl06G0630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01840 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32450, gene.Thate06g14930 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.482, evm.TU.LG07.943 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005506, Pov_00015493 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37182, Lb1G03849, Lb1G03851, Lb7G34358 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.2249, AH07.740, BH06.1991, BH06.2035, BH07.871 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0105310, gene-QOZ80_2BG0158780 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0572160.1, HORVU.MOREX.r3.7HG0720100.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021377, gene-QYE76_034992 |
| Poaceae | Oryza coarctata | 4 | Oco03G004670, Oco04G005230, Oco11G012600, Oco12G012660 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g10660.1, LOC_Os06g40490.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G076900, gene-BS78_10G186500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202106 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G029920, Chr05G007650, Chr06G033000, Chr0G007940 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G325300, Tel7E01G642000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG023280, gene_TRIDC6BG028150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G164100.1, TraesCS6B02G188000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb235850_P001, Zm00001eb386520_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10069, nbis-gene-41051 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15146, Zma_g30793, Zma_g33045 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG06.1249, evm.TU.LG07.1776, evm.TU.LG11.597 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25440 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_18_RagTag.419, evm.TU.Scaffold_4_RagTag.2300 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25141, nbisL1-mrna-28101 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13589, nbisL1-mrna-2624 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5046, nbisL1-mrna-7857 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1351, evm.TU.utg000023l.203 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000421, Maker00018840 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1833, nbisL1-mrna-7276 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21195, nbisL1-mrna-22330 |
| Salicaceae | Populus euphratica | 5 | populus_peu05755, populus_peu11122, populus_peu12137 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600714, gene-LOC132603164, gene-LOC132626118 |
| Solanaceae | Solanum chilense | 3 | SOLCI002705100, SOLCI004209300, SOLCI006179100 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004801, gene-LOC107022643, gene-LOC107024175 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10145, gene_8974 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2204, TC10G1303 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03920.v3.1, Zosma05g28630.v3.1 |