Basic Information
Locus ID:
nbisL1-mrna-18302
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 35135314 | 35138485 | - | nbisL1-mrna-18302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 41,809.21 Da | 61.35 | 76.21 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 312 | 355 | 2.56444E-16 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 90 | 1.4E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 312 | 355 | 9.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 361 | 2.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 274 | 360 | 2.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 313 | 354 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 313 | 355 | 12.784338 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011022503.1 | PREDICTED: RING-H2 finger protein ATL20-like [Populus euphratica] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2IKG7 | RING-H2 finger protein ATL20-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology