Basic Information
Locus ID:
nbisL1-mrna-18297
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3596940 | 3599111 | + | nbisL1-mrna-18297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 35,362.97 Da | 51.84 | 90.90 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 279 | 329 | 1.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 332 | 4.95E-16 | - |
| Gene3D | G3DSA:1.10.10.1740 | - | 126 | 219 | 4.6E-7 | IPR044890 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 333 | 1.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 281 | 328 | 4.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 281 | 329 | 12.282736 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020536564.1 | protein FATTY ACID EXPORT 2, chloroplastic [Jatropha curcas] | 0 |
| Q94A32 | Protein FATTY ACID EXPORT 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FAX2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7DQ28 | E3 ubiquitin-protein ligase ATL4-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00332 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12276 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25445 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021956 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g061870, BVRB_9g204110 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14414, Sbi_jg53696, Sbi_jg59388, Sbi_jg63260 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10298, Seu_jg23631 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012649, GOSA_00020762 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl02814, Sgl21980, Sgl25978, Sgl78215, Sgl80706 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015400, gene:ENSEOMG00000031139 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0021580, CQ.Regalona.r1.3BG0022430 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208630 |
| Apiaceae | Apium graveolens | 2 | Ag1G01178, Ag3G00060 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G005450, COCNU_08G003260 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717806 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2628.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G03512 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26240.1, AT3G43520.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002166m.g.v1.0, Thhalv10002673m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g06390.v2.2, Sp5g17760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g025070.2N, BniB06g025370.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1457 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1516 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11260, gene.Cymno05g12320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0040s00024.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10430 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.717 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021954 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2538, BH09.2771, CH09.2970 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301280, gene-QOZ80_4BG0332000 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0203500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046817 |
| Poaceae | Oryza coarctata | 3 | Oco03G021640, Oco07G017750, Oco08G017160 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G263500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300594 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G022580, Chr23G002230, Chr25G001740, Chr26G017140 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G859400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG071330, gene_TRIDC2BG077130 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G506400.1, TraesCS2B02G534700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb068040_P001, Zm00001eb432380_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23044, nbis-gene-6055 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20575, Zma_g22117 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1058, evm.TU.LG09.1896, evm.TU.LG13.1241 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26240 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.633, evm.TU.Scaffold_10_RagTag.642 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13854, nbisL1-mrna-25844 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12092, nbisL1-mrna-16208 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1349, nbisL1-mrna-8889 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.452 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014729 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18297, nbisL1-mrna-3935 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-8072, nbisL1-mrna-8076 |
| Salicaceae | Populus euphratica | 3 | populus_peu12550, populus_peu38234, populus_peu38313 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643524 |
| Solanaceae | Solanum chilense | 1 | SOLCI001725600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004914 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11872, gene_6448 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1326, TC05G1886 |
| Zosteraceae | Zostera marina | 2 | Zosma03g03880.v3.1, Zosma1395g00010.v3.1 |