Basic Information
Locus ID:
nbisL1-mrna-18274
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000107F_pilon | 211878 | 226600 | - | nbisL1-mrna-18274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 7,061.26 Da | 53.56 | 111.43 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 62 | 5.86E-7 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 63 | 1.3E-6 | IPR015943 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 31 | 63 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 31 | 63 | 10.608706 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_047179206.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Vigna umbellata] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5K0YTJ1 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS8574 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology