Basic Information
Locus ID:
nbisL1-mrna-1827
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5655925 | 5658440 | - | nbisL1-mrna-1827 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 69,944.75 Da | 45.56 | 103.33 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 65 | 106 | 0.001 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 225 | 248 | 0.073 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 545 | 566 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 250 | 273 | 0.029 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 277 | 299 | 0.61 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 184 | 651 | 8.63E-38 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 103 | 1.11E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 456 | 654 | 1.4E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 263 | 4.7E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 264 | 455 | 4.5E-31 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 251 | 276 | 1.2E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 225 | 250 | 1.1E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 516 | 541 | 43.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 383 | 408 | 43.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 357 | 382 | 7.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 463 | 488 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 409 | 434 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 543 | 568 | 0.0086 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 277 | 302 | 1.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 199 | 224 | 7.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 489 | 514 | 0.053 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 569 | 593 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 621 | 646 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 595 | 620 | 110.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_011017769.1 | PREDICTED: EIN3-binding F-box protein 1-like [Populus euphratica] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JKB4 | EIN3-binding F-box protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology