Basic Information
Locus ID:
nbisL1-mrna-18258
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 34776615 | 34785707 | - | nbisL1-mrna-18258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 94,179.20 Da | 41.06 | 86.81 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 567 | 700 | 2.24767E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 569 | 699 | 7.4E-39 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 723 | 763 | 5.9E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 529 | 771 | 2.17E-61 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 97 | 362 | 4.0E-5 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 701 | 767 | 1.4E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 528 | 700 | 1.4E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 565 | 702 | 1.9E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 672 | 691 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 518 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021890946.1 | - | 0 |
| Q7ZZ25 | Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2 | 0 | |
| TrEMBL | V4TS31 | AAA domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018858mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology