Basic Information
Locus ID:
nbisL1-mrna-18251
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 1244743 | 1248051 | + | nbisL1-mrna-18251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 58,001.18 Da | 56.50 | 64.45 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 251 | 307 | 8.5E-26 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 405 | 477 | 1.4E-10 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 249 | 309 | 3.66E-26 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 396 | 479 | 1.7E-14 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 240 | 310 | 3.1E-28 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 389 | 480 | 3.7E-23 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 250 | 308 | 1.5E-37 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 404 | 478 | 1.8E-15 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 245 | 309 | 24.477913 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 399 | 479 | 25.23542 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 255 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_012084758.1 | probable WRKY transcription factor 4 isoform X1 [Jatropha curcas] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LK96 | Uncharacterized protein WRKY transcription factor 06 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology