Basic Information
Locus ID:
nbisL1-mrna-18217
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 1065136 | 1067658 | - | nbisL1-mrna-18217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 77,771.33 Da | 35.80 | 100.83 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 114 | 136 | 0.11 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 565 | 643 | 2.2E-9 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 325 | 384 | 2.6E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 15 | 37 | 0.047 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 4 | 439 | 1.59E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 545 | 641 | 8.68E-20 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 197 | 3.7E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 219 | 477 | 6.4E-49 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 5 | 46 | 5.6E-9 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 639 | 722 | 1.7E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 525 | 638 | 3.3E-27 | - |
| SMART | SM00369 | LRR_typ_2 | 371 | 395 | 5.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 323 | 346 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 13 | 36 | 14.0 | IPR003591 |
| SMART | SM00219 | tyrkin_6 | 563 | 717 | 0.0065 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 563 | 723 | 12.767962 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 569 | 591 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 371 | 384 | 1.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 16 | 29 | 1.6E-5 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_011000077.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Populus euphratica] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M9E7 | Uncharacterized protein MANES_01G096300 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology