halophFGD

Basic Information

Locus ID: nbisL1-mrna-1820

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Transcription factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	17902685	17904845	-	nbisL1-mrna-1820

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.89	36,796.86 Da	57.30	66.65	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14703	bZIP_plant_RF2	221	270	4.15436E-27	IPR044759
Pfam	PF00170	bZIP transcription factor	220	268	1.2E-8	IPR004827
SUPERFAMILY	SSF57959	Leucine zipper domain	220	271	8.44E-11	-
Gene3D	G3DSA:1.20.5.170	-	219	296	4.4E-8	-
SMART	SM00338	brlzneu	216	280	1.0E-14	IPR004827
ProSiteProfiles	PS50217	Basic-leucine zipper (bZIP) domain profile.	218	281	10.909495	IPR004827
MobiDBLite	mobidb-lite	consensus disorder prediction	1	81	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	40	54	-	-
Coils	Coil	Coil	236	291	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003700 (DNA-binding transcription factor activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G06070.1	Basic-leucine zipper (bZIP) transcription factor family protein.
RefSeq	XP_012065205.1	probable transcription factor PosF21 [Jatropha curcas]
Swiss-Prot	Q04088	Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 PE=2 SV=1
TrEMBL	A0A2P2M991	Transcription factor RF2a OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	16	jg10077, jg10505, jg10560, jg10961, jg11985, jg14194, jg5925 ... jg23077, jg27606, jg28836, jg28837, jg28838, jg30348, jg34084, jg6339, jg919
Aizoaceae	Mesembryanthemum crystallinum	5	gene_1188, gene_15830, gene_17088, gene_22869, gene_26494
Amaranthaceae	Atriplex hortensis	6	Ah010086, Ah015376, Ah019442, Ah023550, Ah024386, Ah032092
Amaranthaceae	Beta vulgaris	5	BVRB_1g005070, BVRB_1g011350, BVRB_2g042510, BVRB_3g057700 ... BVRB_7g175790
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg11009, Sbi_jg26903, Sbi_jg28894, Sbi_jg30136 ... Sbi_jg3046, Sbi_jg33663, Sbi_jg38557, Sbi_jg38879, Sbi_jg43584, Sbi_jg46014, Sbi_jg54241, Sbi_jg6666
Amaranthaceae	Salicornia europaea	6	Seu_jg10817, Seu_jg15266, Seu_jg18317, Seu_jg20341 ... Seu_jg6856, Seu_jg8363
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000914, GOSA_00002998, GOSA_00004076, GOSA_00005597 ... GOSA_00006349, GOSA_00023719
Amaranthaceae	Suaeda glauca	14	Sgl01779, Sgl06940, Sgl10152, Sgl11705, Sgl15302, Sgl15354 ... Sgl17000, Sgl55651, Sgl60860, Sgl66063, Sgl70378, Sgl73208, Sgl75260, Sgl76742
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000006065, gene:ENSEOMG00000014364 ... gene:ENSEOMG00000015531, gene:ENSEOMG00000015952, gene:ENSEOMG00000016280, gene:ENSEOMG00000019502, gene:ENSEOMG00000030422, gene:ENSEOMG00000032897, gene:ENSEOMG00000033512, gene:ENSEOMG00000036401, gene:ENSEOMG00000038671, gene:ENSEOMG00000046058, gene:ENSEOMG00000047918, gene:ENSEOMG00000048247, gene:ENSEOMG00000048670, gene:ENSEOMG00000052013
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1AG0009530, CQ.Regalona.r1.1AG0014330 ... CQ.Regalona.r1.1BG0011710, CQ.Regalona.r1.1BG0016330, CQ.Regalona.r1.2AG0002830, CQ.Regalona.r1.2BG0004020, CQ.Regalona.r1.3AG0010240, CQ.Regalona.r1.3BG0010400, CQ.Regalona.r1.7AG0001170, CQ.Regalona.r1.7BG0006520, CQ.Regalona.r1.9AG0018180, CQ.Regalona.r1.9BG0004500
Anacardiaceae	Pistacia vera	6	pistato.v30037990, pistato.v30047390, pistato.v30115720 ... pistato.v30131540, pistato.v30244880, pistato.v30260650
Apiaceae	Apium graveolens	8	Ag11G03045, Ag2G00214, Ag3G01906, Ag4G02447, Ag5G02833 ... Ag6G02545, Ag9G00019, AgUnG00310
Arecaceae	Cocos nucifera	16	COCNU_01G018820, COCNU_01G022130, COCNU_02G012510 ... COCNU_04G012650, COCNU_06G014690, COCNU_07G007470, COCNU_08G006080, COCNU_09G001080, COCNU_10G005700, COCNU_11G005270, COCNU_12G006280, COCNU_15G001490, COCNU_16G005770, scaffold005347G000030, scaffold005347G000040, scaffold013439G000020
Arecaceae	Phoenix dactylifera	12	gene-LOC103696469, gene-LOC103698388, gene-LOC103700111 ... gene-LOC103701196, gene-LOC103702130, gene-LOC103704348, gene-LOC103706037, gene-LOC103707797, gene-LOC103708578, gene-LOC103708899, gene-LOC103716895, gene-LOC103720402
Asparagaceae	Asparagus officinalis	10	AsparagusV1_01.1246.V1.1, AsparagusV1_02.760.V1.1 ... AsparagusV1_04.1911.V1.1, AsparagusV1_04.2702.V1.1, AsparagusV1_05.548.V1.1, AsparagusV1_07.544.V1.1, AsparagusV1_08.3356.V1.1, AsparagusV1_09.151.V1.1, AsparagusV1_09.579.V1.1, AsparagusV1_10.1395.V1.1
Asteraceae	Flaveria trinervia	11	Ftri12G18410, Ftri16G28881, Ftri17G06311, Ftri17G32825 ... Ftri18G15774, Ftri18G16706, Ftri2G10573, Ftri5G27505, Ftri6G04370, Ftri9G03934, Ftri9G17341
Brassicaceae	Arabidopsis thaliana	7	AT1G06070.1, AT1G06850.1, AT1G43700.1, AT2G21230.3 ... AT2G31370.3, AT2G40620.1, AT4G38900.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10000129m.g.v1.0, Thhalv10007692m.g.v1.0 ... Thhalv10008146m.g.v1.0, Thhalv10011634m.g.v1.0, Thhalv10016790m.g.v1.0, Thhalv10016819m.g.v1.0, Thhalv10024895m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g04880.v2.2, Sp1g05580.v2.2, Sp1g32720.v2.2 ... Sp4g00410.v2.2, Sp4g13850.v2.2, Sp4g22950.v2.2, Sp7g36940.v2.2
Brassicaceae	Brassica nigra	24	BniB01g004740.2N, BniB01g012470.2N, BniB01g022940.2N ... BniB02g003060.2N, BniB02g016900.2N, BniB02g026960.2N, BniB02g089510.2N, BniB03g001650.2N, BniB03g001970.2N, BniB03g015540.2N, BniB04g036320.2N, BniB04g065180.2N, BniB06g000230.2N, BniB06g019110.2N, BniB06g020490.2N, BniB06g034840.2N, BniB06g043850.2N, BniB06g044500.2N, BniB06p000165.2N, BniB07g013100.2N, BniB08g019480.2N, BniB08g026250.2N, BniB08g026270.2N, BniB08g026280.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G0029, Ceq03G0921, Ceq03G1963, Ceq07G1440, Ceq07G1481 ... Ceq08G2447
Casuarinaceae	Casuarina glauca	6	Cgl02G0031, Cgl03G0996, Cgl03G2111, Cgl07G1535, Cgl07G1561 ... Cgl08G2682
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno03g05060, gene.Cymno07g01080, gene.Cymno07g11210 ... gene.Cymno08g08120, gene.Cymno08g08150, gene.Cymno10g04200, gene.Cymno14g02230, gene.Cymno15g06610
Dunaliellaceae	Dunaliella salina	1	Dusal.0658s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate01g07480, gene.Thate02g08650, gene.Thate04g27700 ... gene.Thate05g14070, gene.Thate06g03690, gene.Thate08g02810
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-12251, nbisL1-mrna-1828, nbisL1-mrna-3191 ... nbisL1-mrna-4126, nbisL1-mrna-5162, nbisL1-mrna-9026
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.555, evm.TU.LG02.1698, evm.TU.LG06.720 ... evm.TU.LG08.233, evm.TU.LG11.222
Plantaginaceae	Plantago ovata	10	Pov_00001567, Pov_00002543, Pov_00007393, Pov_00019480 ... Pov_00019481, Pov_00021736, Pov_00023011, Pov_00025177, Pov_00036892, Pov_00040660
Plumbaginaceae	Limonium bicolor	4	Lb1G07898, Lb7G34384, Lb7G34391, Lb7G34723
Poaceae	Echinochloa crus-galli	29	AH01.3110, AH01.3728, AH01.5157, AH03.2599, AH03.4066 ... AH04.312, AH05.267, AH08.2246, AH08.2264, AH09.1427, BH01.3460, BH01.4077, BH01.5052, BH01.5297, BH03.2740, BH03.4405, BH04.359, BH05.311, BH08.2378, BH08.2409, BH09.1610, CH01.3698, CH01.4341, CH03.2938, CH04.359, CH05.363, CH07.106, CH08.2557, CH08.2582
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_2AG0114700, gene-QOZ80_2BG0168460 ... gene-QOZ80_3AG0232030, gene-QOZ80_3AG0247390, gene-QOZ80_3BG0280850, gene-QOZ80_3BG0295910, gene-QOZ80_4AG0312240, gene-QOZ80_4BG0343490, gene-QOZ80_5AG0382450, gene-QOZ80_5BG0429350, gene-QOZ80_6AG0529890, gene-QOZ80_6BG0483810, gene-QOZ80_7AG0581840, gene-QOZ80_7BG0612980, gene-QOZ80_8AG0639250, gene-QOZ80_8AG0639500, gene-QOZ80_8BG0667850, gene-QOZ80_8BG0668170, gene-QOZ80_9AG0675710, gene-QOZ80_9BG0699450
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.1HG0051920.1, HORVU.MOREX.r3.2HG0112060.1 ... HORVU.MOREX.r3.2HG0178240.1, HORVU.MOREX.r3.4HG0349900.1, HORVU.MOREX.r3.4HG0378580.1, HORVU.MOREX.r3.4HG0410830.1, HORVU.MOREX.r3.5HG0457870.1, HORVU.MOREX.r3.5HG0496250.1, HORVU.MOREX.r3.7HG0686310.1, HORVU.MOREX.r3.7HG0686580.1
Poaceae	Lolium multiflorum	12	gene-QYE76_002959, gene-QYE76_006638, gene-QYE76_012278 ... gene-QYE76_030428, gene-QYE76_030459, gene-QYE76_030466, gene-QYE76_038728, gene-QYE76_044815, gene-QYE76_064825, gene-QYE76_064856, gene-QYE76_068076, gene-QYE76_071210
Poaceae	Oryza coarctata	18	Oco05G001620, Oco05G012950, Oco06G001590, Oco06G013520 ... Oco07G009570, Oco08G009370, Oco13G015890, Oco14G016680, Oco15G013880, Oco16G013050, Oco17G009410, Oco18G009450, Oco19G008690, Oco20G008580, Oco21G001700, Oco22G002570, Oco23G002340, Oco24G001860
Poaceae	Oryza sativa	9	LOC_Os03g03550.1, LOC_Os03g21800.1, LOC_Os04g41820.1 ... LOC_Os07g48180.1, LOC_Os08g43090.1, LOC_Os09g34060.1, LOC_Os10g38820.1, LOC_Os11g06170.1, LOC_Os12g06520.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G305200, gene-BS78_01G362400 ... gene-BS78_01G497000, gene-BS78_02G241900, gene-BS78_02G391000, gene-BS78_05G061000, gene-BS78_06G146900, gene-BS78_07G211700, gene-BS78_07G215700, gene-BS78_08G034300
Poaceae	Puccinellia tenuiflora	14	Pt_Chr0100588, Pt_Chr0102617, Pt_Chr0102642, Pt_Chr0104283 ... Pt_Chr0302254, Pt_Chr0302293, Pt_Chr0305445, Pt_Chr0305449, Pt_Chr0403498, Pt_Chr0403510, Pt_Chr0403519, Pt_Chr0503058, Pt_Chr0701274, Pt_Chr0703279
Poaceae	Sporobolus alterniflorus	37	Chr01G038440, Chr04G005630, Chr04G010830, Chr04G022650 ... Chr06G015280, Chr06G024430, Chr06G028510, Chr06G029000, Chr07G001180, Chr07G005940, Chr07G029020, Chr0G002520, Chr0G003540, Chr10G013240, Chr11G009040, Chr12G000980, Chr12G005460, Chr13G021520, Chr14G011130, Chr16G009910, Chr16G017220, Chr16G018430, Chr16G018620, Chr17G008940, Chr17G017510, Chr17G017700, Chr19G000300, Chr19G012450, Chr20G002540, Chr21G011240, Chr23G009770, Chr24G012400, Chr25G009900, Chr26G009980, Chr27G003470, Chr27G017290, Chr29G000920
Poaceae	Thinopyrum elongatum	10	Tel1E01G329400, Tel2E01G229100, Tel2E01G610900 ... Tel4E01G180700, Tel4E01G308700, Tel4E01G528200, Tel5E01G227500, Tel5E01G484000, Tel7E01G467000, Tel7E01G468600
Poaceae	Triticum dicoccoides	20	gene_TRIDC1AG028190, gene_TRIDC1BG032560 ... gene_TRIDC2AG012600, gene_TRIDC2AG050990, gene_TRIDC2BG015380, gene_TRIDC2BG054190, gene_TRIDC3BG035060, gene_TRIDC4AG018620, gene_TRIDC4AG033380, gene_TRIDC4BG030760, gene_TRIDC4BG054000, gene_TRIDC5AG021220, gene_TRIDC5AG044800, gene_TRIDC5AG069990, gene_TRIDC5BG021840, gene_TRIDC5BG048950, gene_TRIDC7AG034880, gene_TRIDC7AG035140, gene_TRIDC7BG026210, gene_TRIDC7BG026360
Poaceae	Triticum aestivum	27	TraesCS1A02G186000.1, TraesCS1B02G193800.1 ... TraesCS1D02G191000.1, TraesCS2A02G105700.1, TraesCS2A02G352100.1, TraesCS2B02G122700.1, TraesCS2D02G105400.1, TraesCS4A02G135600.2, TraesCS4A02G209900.1, TraesCS4B02G113400.1, TraesCS4B02G169600.1, TraesCS4B02G320400.1, TraesCS4D02G110900.1, TraesCS4D02G171700.2, TraesCS4D02G316900.1, TraesCS5A02G124600.1, TraesCS5A02G299400.1, TraesCS5A02G491600.1, TraesCS5B02G124200.1, TraesCS5B02G301900.1, TraesCS5D02G132300.1, TraesCS5D02G308600.1, TraesCS7A02G266400.1, TraesCS7A02G268700.1, TraesCS7B02G166100.1, TraesCS7D02G268400.1, TraesCS7D02G269300.1
Poaceae	Zea mays	18	Zm00001eb002010_P001, Zm00001eb016100_P001 ... Zm00001eb021750_P001, Zm00001eb037290_P001, Zm00001eb037460_P001, Zm00001eb078620_P001, Zm00001eb092090_P001, Zm00001eb102780_P002, Zm00001eb111560_P001, Zm00001eb139480_P001, Zm00001eb198410_P002, Zm00001eb198470_P001, Zm00001eb202260_P001, Zm00001eb318730_P003, Zm00001eb330680_P002, Zm00001eb395100_P002, Zm00001eb403570_P001, Zm00001eb407530_P001
Poaceae	Zoysia japonica	19	nbis-gene-14286, nbis-gene-1659, nbis-gene-17582 ... nbis-gene-25579, nbis-gene-27108, nbis-gene-3068, nbis-gene-33245, nbis-gene-3350, nbis-gene-35402, nbis-gene-36158, nbis-gene-36970, nbis-gene-42765, nbis-gene-42786, nbis-gene-46324, nbis-gene-4647, nbis-gene-47093, nbis-gene-47852, nbis-gene-5150, nbis-gene-53967
Poaceae	Zoysia macrostachya	18	Zma_g1253, Zma_g12798, Zma_g15571, Zma_g17603, Zma_g18446 ... Zma_g19974, Zma_g21534, Zma_g2177, Zma_g23360, Zma_g23373, Zma_g24778, Zma_g25520, Zma_g30092, Zma_g32276, Zma_g3677, Zma_g4522, Zma_g5790, Zma_g7077
Portulacaceae	Portulaca oleracea	18	evm.TU.LG02.1424, evm.TU.LG04.1369, evm.TU.LG04.1637 ... evm.TU.LG05.1419, evm.TU.LG05.1890, evm.TU.LG05.469, evm.TU.LG06.1470, evm.TU.LG07.1452, evm.TU.LG08.802, evm.TU.LG09.449, evm.TU.LG10.1258, evm.TU.LG11.814, evm.TU.LG16.1638, evm.TU.LG19.624, evm.TU.LG22.1120, evm.TU.LG24.87, evm.TU.LG25.851, evm.TU.LG26.27
Posidoniaceae	Posidonia oceanica	7	gene.Posoc02g12050, gene.Posoc02g25050, gene.Posoc05g06260 ... gene.Posoc05g20980, gene.Posoc06g08180, gene.Posoc06g08220, gene.Posoc07g12780
Rhizophoraceae	Bruguiera sexangula	9	evm.TU.Scaffold_11_RagTag.294, evm.TU.Scaffold_1_RagTag.2209 ... evm.TU.Scaffold_2_RagTag.146, evm.TU.Scaffold_3_RagTag.1501, evm.TU.Scaffold_4_RagTag.880, evm.TU.Scaffold_6_RagTag.1101, evm.TU.Scaffold_7_RagTag.692, evm.TU.Scaffold_8_RagTag.1257, evm.TU.Scaffold_8_RagTag.543
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-14127, nbisL1-mrna-15553, nbisL1-mrna-1820 ... nbisL1-mrna-18611, nbisL1-mrna-19007, nbisL1-mrna-27460, nbisL1-mrna-5062
Rhizophoraceae	Ceriops tagal	9	nbisL1-mrna-1082, nbisL1-mrna-13880, nbisL1-mrna-1520 ... nbisL1-mrna-16209, nbisL1-mrna-16242, nbisL1-mrna-16289, nbisL1-mrna-18189, nbisL1-mrna-18210, nbisL1-mrna-20443
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-13195, nbisL1-mrna-14274, nbisL1-mrna-1514 ... nbisL1-mrna-18117, nbisL1-mrna-2730, nbisL1-mrna-3341, nbisL1-mrna-6578, nbisL1-mrna-9399
Rhizophoraceae	Kandelia candel	9	evm.TU.utg000002l.366, evm.TU.utg000002l.580 ... evm.TU.utg000005l.180, evm.TU.utg000008l.564, evm.TU.utg000009l.1148, evm.TU.utg000011l.700, evm.TU.utg000016l.149, evm.TU.utg000018l.649, evm.TU.utg000019l.330
Rhizophoraceae	Kandelia obovata	8	Maker00001305, Maker00001635, Maker00003356, Maker00005227 ... Maker00008063, Maker00010106, Maker00011789, Maker00016710
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-13600, nbisL1-mrna-14022, nbisL1-mrna-14156 ... nbisL1-mrna-14342, nbisL1-mrna-15804, nbisL1-mrna-419, nbisL1-mrna-4708, nbisL1-mrna-8936, nbisL1-mrna-9639
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-12542, nbisL1-mrna-12882, nbisL1-mrna-14129 ... nbisL1-mrna-18423, nbisL1-mrna-18636, nbisL1-mrna-18921, nbisL1-mrna-19358, nbisL1-mrna-21102, nbisL1-mrna-4148
Salicaceae	Populus euphratica	10	populus_peu08795, populus_peu14538, populus_peu14868 ... populus_peu14869, populus_peu16383, populus_peu17015, populus_peu22580, populus_peu24001, populus_peu32543, populus_peu36566
Solanaceae	Lycium barbarum	9	gene-LOC132599245, gene-LOC132606595, gene-LOC132611274 ... gene-LOC132611412, gene-LOC132627299, gene-LOC132628096, gene-LOC132638152, gene-LOC132641228, gene-LOC132643534
Solanaceae	Solanum chilense	6	SOLCI000409300, SOLCI002729400, SOLCI003896800 ... SOLCI005553800, SOLCI006415400, SOLCI006731100
Solanaceae	Solanum pennellii	7	gene-LOC107007761, gene-LOC107015521, gene-LOC107015672 ... gene-LOC107021147, gene-LOC107023697, gene-LOC107023871, gene-LOC107024225
Tamaricaceae	Reaumuria soongarica	7	STRG.21882_chr08_+, STRG.28973_chr11_-, STRG.3646_chr02_- ... STRG.7058_chr04_-, STRG.9551_chr03_+, gene_15714, gene_8766
Tamaricaceae	Tamarix chinensis	10	TC03G2183, TC03G2867, TC05G2061, TC06G1305, TC09G1914 ... TC09G2272, TC10G0395, TC10G0396, TC11G2397, TC12G0952
Zosteraceae	Zostera marina	3	Zosma04g23910.v3.1, Zosma05g02820.v3.1, Zosma05g08910.v3.1