Basic Information
Locus ID:
nbisL1-mrna-18186
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 4181879 | 4184191 | + | nbisL1-mrna-18186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 42,593.53 Da | 60.77 | 80.63 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 314 | 357 | 3.40878E-17 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 30 | 91 | 5.5E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 313 | 357 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 360 | 2.66E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 362 | 4.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 315 | 356 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 357 | 12.917115 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011022503.1 | PREDICTED: RING-H2 finger protein ATL20-like [Populus euphratica] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X8D9V0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_014063 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology