Basic Information
Locus ID:
nbisL1-mrna-18184
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 825592 | 830282 | + | nbisL1-mrna-18184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 84,748.21 Da | 45.67 | 77.26 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54695 | POZ domain | 10 | 63 | 1.96E-6 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 82 | 8.7E-8 | IPR011333 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 180 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15840.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_034898733.1 | uncharacterized protein LOC118036971 [Populus alba] | 0 |
| TrEMBL | A0A2P2KEG5 | Uncharacterized protein LOC8278730 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12422 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18787 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020901 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59911, Sbi_jg62840 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24002 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021862 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03396, Sgl08517, Sgl08520 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012538, gene:ENSEOMG00000031524 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0016080, CQ.Regalona.r1.3BG0016370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234400 |
| Apiaceae | Apium graveolens | 1 | Ag8G01715 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G009970 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715285 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.931.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G28345 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024402m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g14240.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g016590.2N, BniB02g073690.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0911, Ceq09G1149 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1031, Cgl09G1238 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g14400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g03840 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1304 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019218 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34002 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4419, BH02.4459, CH02.4508 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0045550, gene-QOZ80_1BG0095580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0313410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057646 |
| Poaceae | Oryza coarctata | 2 | Oco01G029250, Oco02G030430 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G393300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600698 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G001810, Chr05G032730 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G472900, Tel3E01G714200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG063790, gene_TRIDC3BG071660 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G451000.1, TraesCS3B02G488400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb142310_P001, Zm00001eb363540_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10896, nbis-gene-10897 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9328 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG16.1503, evm.TU.LG26.161, evm.TU.LG26.162 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.581 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1385, nbisL1-mrna-21757 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6293 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.863 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012942 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12200 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18184 |
| Salicaceae | Populus euphratica | 2 | populus_peu19227, populus_peu22211 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645053 |
| Solanaceae | Solanum chilense | 1 | SOLCI002689900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008313 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7229 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1042 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22430.v3.1 |