Basic Information
Locus ID:
nbisL1-mrna-18183
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
UBP26
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 3212653 | 3214950 | - | nbisL1-mrna-18183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 33,545.82 Da | 37.46 | 78.97 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 134 | 295 | 9.3E-15 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 36 | 67 | 4.5E-7 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 34 | 298 | 1.84E-43 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 73 | 300 | 9.6E-37 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 28 | 72 | 3.6E-9 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 249 | 23.079844 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 36 | 51 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49600.1 | ubiquitin-specific protease 26. Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1. | 0 |
| RefSeq | XP_021667337.1 | ubiquitin carboxyl-terminal hydrolase 26-like isoform X3 [Hevea brasiliensis] | 0 |
| Q9SCJ9 | Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana OX=3702 GN=UBP26 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2JYZ0 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2475 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18183 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.223 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003029 |