Basic Information
Locus ID:
nbisL1-mrna-18171
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 4430432 | 4432388 | + | nbisL1-mrna-18171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 26,983.58 Da | 35.22 | 81.22 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 44 | 133 | 1.14323E-14 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 44 | 106 | 2.3E-13 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 27 | 173 | 2.09E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 108 | 144 | 3.0E-11 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 27 | 106 | 3.5E-23 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 145 | 178 | 3.0E-11 | - |
| SMART | SM00382 | AAA_5 | 40 | 145 | 1.7E-4 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 110 | 129 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 200 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_012086803.1 | putative cell division cycle ATPase [Jatropha curcas] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A067JNA9 | AAA domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_20518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology