Basic Information
Locus ID:
nbisL1-mrna-18159
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 699766 | 703638 | - | nbisL1-mrna-18159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 99,440.42 Da | 34.26 | 106.97 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 76 | 4.0E-11 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 156 | 176 | 0.58 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 107 | 144 | 1.1E-6 | IPR025875 |
| SUPERFAMILY | SSF52058 | L domain-like | 387 | 729 | 2.75E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 407 | 6.8E-65 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 764 | 883 | 8.4E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 288 | 1.4E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 289 | 393 | 1.9E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 394 | 731 | 2.0E-96 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 184 | 6.8E-45 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 585 | 608 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 609 | 633 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 105 | 129 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 153 | 176 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 321 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 658 | 681 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 249 | 273 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 369 | 392 | 310.0 | IPR003591 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63930.2 | - | 0 |
| RefSeq | XP_002299290.2 | probable leucine-rich repeat receptor-like protein kinase At2g33170 [Populus trichocarpa] | 0 |
| Q9LVP0 | Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana OX=3702 GN=At5g63930 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JFP7 | Non-specific serine/threonine protein kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311270, gene-QOZ80_4BG0342480 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12218, nbisL1-mrna-22882 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18159 |