Basic Information
Locus ID:
nbisL1-mrna-1815
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 17874657 | 17876362 | - | nbisL1-mrna-1815 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 47,095.80 Da | 33.63 | 93.11 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 43 | 1.4E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 63 | 2.35E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 68 | 6.9E-7 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 2.4E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 99 | 334 | 4.0E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 45 | 9.576953 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021639932.1 | F-box protein CPR30-like [Hevea brasiliensis] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2YNZ0 | F-box domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_013658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1084 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-1815, nbisL1-mrna-19995, nbisL1-mrna-19997 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13427 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011546 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22766 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12172 |