Basic Information
Locus ID:
nbisL1-mrna-18131
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 486260 | 494118 | + | nbisL1-mrna-18131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 76,998.07 Da | 44.40 | 69.24 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 484 | 712 | 2.14616E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 595 | 630 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 680 | 713 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 558 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 514 | 0.093 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 478 | 712 | 4.58E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 446 | 565 | 4.4E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 566 | 713 | 1.8E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 633 | 672 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 516 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 558 | 7.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 592 | 630 | 5.0E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 674 | 713 | 1.7E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 558 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 681 | 713 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 599 | 639 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 567 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 681 | 713 | 11.998316 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.630869 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 387 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015574101.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Ricinus communis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MFZ5 | Transcriptional corepressor LEUNIG_HOMOLOG isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology