Basic Information
Locus ID:
nbisL1-mrna-18127
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 33625648 | 33632123 | - | nbisL1-mrna-18127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 28,055.25 Da | 45.68 | 88.73 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 71 | 2.76218E-43 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.8E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 92 | 209 | 1.4E-19 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 72 | 8.63E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 80 | 1.0E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 5.4E-41 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 216 | 9.702398 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.01532 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 5.0E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 5.0E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 5.0E-30 | IPR002100 |
| Coils | Coil | Coil | 182 | 212 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.2 | - | 0 |
| RefSeq | XP_048229458.1 | agamous-like MADS-box protein AGL19 [Ricinus communis] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K164 | MADS-box protein SOC1-like OS=Jatropha curcas OX=180498 GN=JCGZ_20695 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology