Basic Information
Locus ID:
nbisL1-mrna-18126
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 450477 | 454490 | - | nbisL1-mrna-18126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 40,210.89 Da | 53.40 | 72.11 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 225 | 270 | 2.93153E-12 | - |
| CDD | cd16872 | ARID_HMGB9-like | 37 | 122 | 9.30849E-52 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 225 | 271 | 9.3E-8 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 39 | 122 | 4.2E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 31 | 134 | 1.96E-30 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 212 | 271 | 1.83E-11 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 207 | 279 | 3.3E-11 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 138 | 3.4E-27 | IPR036431 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 4.2E-30 | - |
| SMART | SM00501 | bright_3 | 36 | 127 | 1.1E-31 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 25.901945 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 225 | 270 | 9.46272 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 349 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021641540.1 | - | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6KV89 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology