Basic Information
Locus ID:
nbisL1-mrna-18123
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the AAA ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 426149 | 433454 | - | nbisL1-mrna-18123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 57,466.53 Da | 45.14 | 83.05 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 274 | 419 | 8.33647E-26 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 289 | 419 | 8.3E-39 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 445 | 476 | 6.3E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 248 | 522 | 3.29E-53 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 420 | 503 | 1.1E-103 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 248 | 519 | 1.1E-103 | IPR027417 |
| SMART | SM00745 | smart | 103 | 162 | 0.0096 | IPR007330 |
| SMART | SM00382 | AAA_5 | 285 | 422 | 1.5E-12 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 391 | 410 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 211 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45500.1 | AAA-type ATPase family protein. | 0 |
| RefSeq | XP_021692843.1 | spastin isoform X1 [Hevea brasiliensis] | 0 |
| Q6DDU8 | - | 0 | |
| TrEMBL | A0A2C9VT54 | Spastin OS=Manihot esculenta OX=3983 GN=MANES_05G043500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29273, jg29275 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1367 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023147 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4357, Sbi_jg49469 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5772 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000320 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11239, Sgl16632, Sgl16633 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013072, gene:ENSEOMG00000033096 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0006030, CQ.Regalona.r1.2BG0023680 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30003230, pistato.v30010840 |
| Apiaceae | Apium graveolens | 1 | Ag6G01650 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G006230 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721384, gene-LOC120108104 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.447.V1.1, AsparagusV1_Unassigned.973.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G03877 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001419m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g062770.2N, BniB06g003980.2N, BniB07g006170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0470 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0500 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g01180, gene.Cymno15g01200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2407s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05620 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2788 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.212 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19720 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.496, BH06.186, CH06.176 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0507260, gene-QOZ80_6BG0459280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0644630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027628 |
| Poaceae | Oryza coarctata | 2 | Oco11G001420, Oco12G001330 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G022600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Ctg00140 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G023890, Chr14G001080, Chr21G000180 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G138900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG062560, gene_TRIDC7AG007060 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G422400.1, TraesCS7A02G065800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb269570_P002, Zm00001eb378370_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51157 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31280 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2400 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g02690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1378 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4075 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2624 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.409 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002150 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12247 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18123 |
| Salicaceae | Populus euphratica | 1 | populus_peu27824 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645617 |
| Solanaceae | Solanum chilense | 1 | SOLCI003037600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008393 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29243_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2690 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03220.v3.1 |