Basic Information
Locus ID:
nbisL1-mrna-18118
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Small ubiquitinrelated modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002187F_pilon | 404195 | 405323 | + | nbisL1-mrna-18118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 9,719.06 Da | 20.19 | 74.20 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 11 | 81 | 1.7E-16 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 87 | 1.17E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 5 | 87 | 2.5E-24 | - |
| SMART | SM00213 | ubq_7 | 11 | 83 | 0.0081 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 11 | 87 | 12.269648 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_028107512.1 | small ubiquitin-related modifier 1-like [Camellia sinensis] | 0 |
| TrEMBL | A0A7J0F2Q3 | Small ubiquitin-related modifier OS=Actinidia rufa OX=165716 GN=Acr_08g0013560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology