Basic Information
Locus ID:
nbisL1-mrna-18107
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Blue copper
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 33482699 | 33484428 | + | nbisL1-mrna-18107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 17,712.39 Da | 26.87 | 94.54 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04216 | Phytocyanin | 23 | 121 | 2.78639E-43 | - |
| Pfam | PF02298 | Plastocyanin-like domain | 33 | 111 | 3.5E-24 | IPR003245 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 22 | 122 | 1.9E-30 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 21 | 127 | 1.5E-32 | IPR008972 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 23 | 123 | 34.269089 | IPR003245 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17675.1 | Cupredoxin superfamily protein. Encodes a Plantacyanin/Basic blue family protein | 0 |
| RefSeq | XP_011029118.1 | PREDICTED: mavicyanin-like [Populus euphratica] | 0 |
| A0A072U307 | Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1 | 0 | |
| TrEMBL | B9I837 | Phytocyanin domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G030000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology