Basic Information
Locus ID:
nbisL1-mrna-18081
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Serine threonine-protein kinase-like protein CCR4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 2560856 | 2563249 | - | nbisL1-mrna-18081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 68,612.40 Da | 47.71 | 80.46 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 238 | 264 | 1.9E-6 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 206 | 227 | 1.1E-6 | - |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 104 | 303 | 5.41E-22 | IPR009091 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 466 | 567 | 5.2E-10 | IPR011009 |
| Gene3D | G3DSA:2.130.10.30 | - | 49 | 309 | 2.7E-26 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 458 | 561 | 1.1E-15 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 492 | 514 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 452 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_048227388.1 | serine/threonine-protein kinase-like protein CCR4 [Ricinus communis] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2QL76 | Serine/threonine-protein kinase-like protein CCR4 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology