Basic Information
Locus ID:
nbisL1-mrna-18080
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 2555857 | 2557107 | + | nbisL1-mrna-18080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 47,516.99 Da | 54.46 | 86.59 | -0.30 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_012079727.1 | putative F-box protein At3g10240 [Jatropha curcas] | 0 |
| TrEMBL | A0A2P2Q4F5 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23251, jg23288, jg37094, jg37095 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1584, gene_1585 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022754 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001600 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg3775, Sbi_jg49024, Sbi_jg49025 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6211 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000697, GOSA_00000698 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10781, Sgl10782, Sgl16134, Sgl16135 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013327, gene:ENSEOMG00000015097 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0001420, CQ.Regalona.r1.1AG0001450 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30034350 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01651, Ftri11G32655 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2741 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1349 |
| Plantaginaceae | Plantago ovata | 9 | Pov_00001400, Pov_00021844, Pov_00021845, Pov_00021847 ... |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG19.1356, evm.TU.LG24.1353, evm.TU.LG24.1354 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.495 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9765 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2231 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18080 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.678 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003551 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9609 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18671 |
| Salicaceae | Populus euphratica | 1 | populus_peu16562 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610478 |
| Solanaceae | Solanum chilense | 1 | SOLCI004042200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031639 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10190_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2412 |