Basic Information
Locus ID:
nbisL1-mrna-1806
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 5513896 | 5521679 | - | nbisL1-mrna-1806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 116,979.63 Da | 53.70 | 88.31 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 530 | 675 | 4.37639E-16 | - |
| Pfam | PF05495 | CHY zinc finger | 944 | 980 | 1.8E-7 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 935 | 981 | 1.24E-11 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 524 | 696 | 2.2E-16 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 937 | 1003 | 14.311157 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 192 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_002511501.1 | zinc finger protein BRUTUS-like At1g18910 [Ricinus communis] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | B9R926 | Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1513200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology