Basic Information
Locus ID:
nbisL1-mrna-18058
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Periodic tryptophan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002200F_pilon | 1696870 | 1701820 | + | nbisL1-mrna-18058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 101,665.19 Da | 39.51 | 86.83 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 335 | 609 | 5.63468E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 408 | 2.6E-4 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 739 | 840 | 8.2E-23 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 494 | 3.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 335 | 365 | 8.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 508 | 536 | 0.088 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 23 | 332 | 5.49E-23 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 256 | 617 | 2.59E-60 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 191 | 3.7E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 447 | 630 | 8.5E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 446 | 1.3E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 498 | 536 | 9.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 452 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 324 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 408 | 8.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 120 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 80 | 8.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 494 | 2.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 366 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 181 | 270.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 376 | 417 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 462 | 495 | 12.815584 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 334 | 375 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 504 | 536 | 9.019239 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 334 | 370 | 11.945589 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 504 | 536 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 503 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 376 | 409 | 11.207411 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 395 | 409 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 481 | 495 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 481 | 495 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 353 | 367 | 2.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 223 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15440.1 | periodic tryptophan protein 2. | 0 |
| RefSeq | XP_021641096.1 | periodic tryptophan protein 2-like [Hevea brasiliensis] | 0 |
| Q8VYZ5 | Periodic tryptophan protein 2 OS=Arabidopsis thaliana OX=3702 GN=PWP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L2E3 | Uncharacterized protein MANES_11G052400 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18220 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26184 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010627 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11529, Sbi_jg46467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20778 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005218, GOSA_00005219 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55968, Sgl61139 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018899, gene:ENSEOMG00000036144 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010310, CQ.Regalona.r1.9AG0014320 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30127660, pistato.v30128740 |
| Apiaceae | Apium graveolens | 1 | Ag5G00128 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G004220, COCNU_14G002730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717859 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3011.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G32814 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15440.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006752m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g006450.2N, BniB06g040850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0274 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0289 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g03270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0148s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.439 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001276, Pov_00030923 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18322 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.1700, BH05.1849, CH03.1656, CH05.1946 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0043400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015952 |
| Poaceae | Oryza coarctata | 2 | Oco09G014450, Oco10G014420 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g44320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G205900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504045, Pt_Chr0504133 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G016830, Chr12G019980, Chr18G014120, Chr22G003380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G561200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG050250, gene_TRIDC1BG057060 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G340000.1, TraesCS1B02G352300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb293800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25110 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28620 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1553, evm.TU.LG18.1258, evm.TU.LG20.626 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22400 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1212 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6853, nbisL1-mrna-6916 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5925 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17024 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.355 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004036 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16353, nbisL1-mrna-19659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18058 |
| Salicaceae | Populus euphratica | 3 | populus_peu02844, populus_peu33735, populus_peu33736 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633331 |
| Solanaceae | Solanum chilense | 1 | SOLCI003331300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012095 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10126 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2159 |
| Zosteraceae | Zostera marina | 1 | Zosma06g00730.v3.1 |