Basic Information
Locus ID:
nbisL1-mrna-18055
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 7466005 | 7466499 | - | nbisL1-mrna-18055 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 18,187.12 Da | 35.99 | 81.65 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 93 | 155 | 3.66083E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 154 | 7.0E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 17 | 78 | 4.0E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 6 | 156 | 3.16E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 82 | 160 | 3.6E-25 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 81 | 4.3E-22 | - |
| SMART | SM00054 | efh_1 | 129 | 157 | 1.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 53 | 81 | 0.17 | IPR002048 |
| SMART | SM00054 | efh_1 | 93 | 121 | 1.2E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 89 | 124 | 15.545536 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 125 | 160 | 14.262346 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 10.189618 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 15.043417 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 138 | 150 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 102 | 114 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_006368362.1 | probable calcium-binding protein CML11 [Populus trichocarpa] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | B9MU63 | Calcium-binding protein CML11 OS=Populus trichocarpa OX=3694 GN=POPTR_001G138000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology