Basic Information
Locus ID:
nbisL1-mrna-18038
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 2318647 | 2324706 | + | nbisL1-mrna-18038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 36,788.92 Da | 44.96 | 101.50 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 127 | 186 | 2.3E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 75 | 1.0E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 103 | 125 | 1.9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 199 | 1.7E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 290 | 338 | 4.83E-9 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 221 | 1.2E-63 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 280 | 340 | 5.2E-18 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 340 | 8.683236 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_011038199.1 | PREDICTED: somatic embryogenesis receptor kinase 2 [Populus euphratica] | 0 |
| Q9XIC7 | Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2WHG5 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_030480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 2 | Ag3G01730, Ag4G02473 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13254, nbisL1-mrna-18038 |