Basic Information
Locus ID:
nbisL1-mrna-18024
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002200F_pilon | 1401404 | 1402480 | - | nbisL1-mrna-18024 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 39,816.63 Da | 34.43 | 77.04 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13964 | Kelch motif | 110 | 157 | 2.6E-8 | - |
| Pfam | PF01344 | Kelch motif | 170 | 204 | 5.4E-8 | IPR006652 |
| Pfam | PF07646 | Kelch motif | 214 | 252 | 2.4E-5 | IPR011498 |
| SUPERFAMILY | SSF117281 | Kelch motif | 82 | 342 | 3.79E-40 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 51 | 8.76E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 24 | 353 | 5.8E-39 | IPR015915 |
| SMART | SM00612 | kelc_smart | 171 | 218 | 1.9E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 120 | 169 | 0.011 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15670.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_002517518.1 | F-box/kelch-repeat protein At1g80440 [Ricinus communis] | 0 |
| Q9LMR5 | F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1 | 0 | |
| TrEMBL | B9RUU9 | F-box/kelch-repeat protein At1g80440-like OS=Ricinus communis OX=3988 GN=RCOM_0894530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology