HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: nbisL1-mrna-18021
Species & Taxonomic ID: Carallia pectinifolia & 98586
Genome Assembly: GCA_037832335.1
Description: BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
Chromosome Start End Strand ID
chr07 32391270 32391440 - nbisL1-mrna-18021
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.70 6,312.32 Da 43.51 94.11 -0.25
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF15054 Domain of unknown function (DUF4535) 6 50 3.9E-21 IPR027854
Best hit
Source Best Hit ID Description E-value
TAIR AT2G35736.1 0
RefSeq XP_043695254.1 - 0
TrEMBL A0A2P2P6V5 Uncharacterized protein MANES_02G038600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 4 Ah004807, Ah012110, Ah018224, Ah027216
Amaranthaceae Beta vulgaris 1 BVRB_6g150640
Amaranthaceae Suaeda glauca 3 Sgl11008, Sgl16416, Sgl16713
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.3AG0008730, CQ.Regalona.r1.5AG0000190 ...
CQ.Regalona.r1.5BG0000220
Arecaceae Cocos nucifera 3 COCNU_04G002610, COCNU_12G007150, scaffold017943G000010
Arecaceae Phoenix dactylifera 2 gene-LOC103696357, gene-LOC103704726
Asteraceae Flaveria trinervia 5 Ftri15G17708, Ftri16G19574, Ftri2G13142, Ftri2G13868 ...
Ftri3G02999
Brassicaceae Arabidopsis thaliana 2 AT2G35736.1, AT4G25225.1
Brassicaceae Brassica nigra 4 BniB01g008800.2N, BniB02g081670.2N, BniB05g012010.2N ...
BniB05g019780.2N
Plantaginaceae Plantago ovata 1 Pov_00012442
Plumbaginaceae Limonium bicolor 2 Lb1G01883, Lb1G01884
Poaceae Echinochloa crus-galli 7 AH05.933, BH08.358, BH08.359, CH03.898, CH05.992, CH08.446 ...
CH08.447
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_8AG0617860, gene-QOZ80_8AG0617880 ...
gene-QOZ80_8BG0645400, gene-QOZ80_8BG0645410
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.1HG0010930.1.CDS1 ...
HORVU.MOREX.r3.5HG0420900.1.CDS1
Poaceae Lolium multiflorum 5 gene-QYE76_032607, gene-QYE76_042775, gene-QYE76_048282 ...
gene-QYE76_048286, gene-QYE76_059359
Poaceae Oryza coarctata 3 Oco09G001020, Oco10G001020, Oco13G004270
Poaceae Oryza sativa 4 LOC_Os05g02740.1, LOC_Os07g13534.1, LOC_Os08g05970.1 ...
LOC_Os08g05980.1
Poaceae Paspalum vaginatum 5 gene-BS78_02G107900, gene-BS78_03G308600 ...
gene-BS78_07G048800, gene-BS78_07G048900, gene-BS78_09G023400
Poaceae Sporobolus alterniflorus 7 Chr16G001360, Chr17G001300, Chr18G002260, Chr19G015830 ...
Chr22G016200, Chr24G004200, Chr28G003630
Poaceae Thinopyrum elongatum 4 Tel1E01G112300, Tel5E01G027500, Tel6E01G532900 ...
Tel7E01G529300
Poaceae Triticum dicoccoides 7 gene_TRIDC1AG007130, gene_TRIDC1BG009100 ...
gene_TRIDC5AG001970, gene_TRIDC5BG006220, gene_TRIDC6AG044600, gene_TRIDC7AG042030, gene_TRIDC7BG033170
Poaceae Triticum aestivum 9 TraesCS1A02G051900.1.cds1, TraesCS1B02G068700.1.cds1 ...
TraesCS1D02G053900.1, TraesCS5A02G012200.1.cds1, TraesCS5B02G037700.1.cds1, TraesCS6A02G292600.1.cds1, TraesCS6B02G323000.1.cds1, TraesCS6D02G273700.1.cds1, TraesCS7A02G300900.1.cds1
Poaceae Zea mays 4 Zm00001eb094930_P001, Zm00001eb172610_P001 ...
Zm00001eb265740_P001, Zm00001eb303930_P001
Poaceae Zoysia japonica 7 nbis-gene-18323, nbis-gene-26584, nbis-gene-39074 ...
nbis-gene-39075, nbis-gene-49391, nbis-gene-55012, nbis-gene-59230
Poaceae Zoysia macrostachya 3 Zma_g27607, Zma_g4944, Zma_g6211
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.3551, evm.TU.LG16.28, evm.TU.LG17.888
Rhizophoraceae Bruguiera sexangula 2 evm.TU.60393.12, evm.TU.Scaffold_11_RagTag.1548
Rhizophoraceae Carallia pectinifolia 5 nbisL1-mrna-12465, nbisL1-mrna-12574, nbisL1-mrna-18021 ...
nbisL1-mrna-22563, nbisL1-mrna-8644
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-20258
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-12842, nbisL1-mrna-15142, nbisL1-mrna-8376
Rhizophoraceae Rhizophora mangle 4 nbisL1-mrna-10750, nbisL1-mrna-22733, nbisL1-mrna-6551 ...
nbisL1-mrna-8908
Salicaceae Populus euphratica 2 populus_peu03363, populus_peu03377
Solanaceae Lycium barbarum 2 gene-LOC132635083, gene-LOC132638761
Solanaceae Solanum pennellii 2 gene-LOC107021415, gene-LOC107026839
Tamaricaceae Reaumuria soongarica 3 gene_14080, gene_8990, gene_8991
Tamaricaceae Tamarix chinensis 1 TC01G3869
Zosteraceae Zostera marina 1 Zosma06g03670.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.