Basic Information
Locus ID:
nbisL1-mrna-18017
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 32373273 | 32374691 | + | nbisL1-mrna-18017 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 40,983.36 Da | 47.86 | 82.23 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06464 | ACD_sHsps-like | 256 | 346 | 3.34307E-7 | - |
| Pfam | PF07734 | F-box associated | 75 | 171 | 1.7E-4 | IPR006527 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 246 | 349 | 2.86E-8 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 235 | 349 | 1.7E-7 | IPR008978 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 3 | 201 | 3.3E-16 | IPR017451 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25200.1 | mitochondrion-localized small heat shock protein 23.6. AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial | 0 |
| RefSeq | XP_016196305.1 | - | 0 |
| Q6Z7V2 | 24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=HSP24.1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A444WNA9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2221 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-18013, nbisL1-mrna-18017, nbisL1-mrna-18018 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8373 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000007l.102 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23281 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10746 |