Basic Information
Locus ID:
nbisL1-mrna-18013
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 32341503 | 32343765 | - | nbisL1-mrna-18013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 66,535.38 Da | 39.28 | 85.25 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06464 | ACD_sHsps-like | 478 | 567 | 2.0907E-10 | - |
| Pfam | PF07734 | F-box associated | 288 | 388 | 7.9E-8 | IPR006527 |
| Pfam | PF00011 | Hsp20/alpha crystallin family | 480 | 572 | 1.1E-4 | IPR002068 |
| Pfam | PF00646 | F-box domain | 45 | 71 | 7.4E-4 | IPR001810 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 478 | 575 | 4.53E-9 | IPR008978 |
| SUPERFAMILY | SSF81383 | F-box domain | 36 | 70 | 1.7E-7 | IPR036047 |
| Gene3D | G3DSA:2.60.40.790 | - | 458 | 580 | 4.5E-10 | IPR008978 |
| SMART | SM00256 | fbox_2 | 38 | 78 | 0.0019 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 160 | 416 | 1.9E-22 | IPR017451 |
| ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 465 | 583 | 10.985892 | IPR002068 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_009376440.2 | - | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A4NH32 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2221 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-18013, nbisL1-mrna-18017, nbisL1-mrna-18018 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8373 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000007l.102 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23281 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10746 |