Basic Information
Locus ID:
nbisL1-mrna-17998
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2525570 | 2526142 | + | nbisL1-mrna-17998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 20,885.84 Da | 59.94 | 64.68 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 146 | 190 | 3.3E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 131 | 190 | 3.68E-8 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 142 | 190 | 2.3E-9 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 143 | 190 | 12.509177 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12570.1 | ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves. | 0 |
| RefSeq | XP_021666738.1 | E3 ubiquitin-protein ligase UPL5-like [Hevea brasiliensis] | 0 |
| Q9SU29 | E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JS98 | E3 ubiquitin-protein ligase UPL5 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21971 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17924 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.309 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17998 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11300 |