Basic Information
Locus ID:
nbisL1-mrna-17990
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DWNN domain, A CCHC-type zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 32145388 | 32157697 | + | nbisL1-mrna-17990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 117,307.75 Da | 53.25 | 58.63 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 288 | 324 | 3.21259E-16 | - |
| Pfam | PF08783 | DWNN domain | 3 | 76 | 1.0E-29 | IPR014891 |
| Pfam | PF00827 | Ribosomal L15 | 847 | 1035 | 2.8E-89 | IPR000439 |
| Pfam | PF13696 | Zinc knuckle | 204 | 224 | 1.5E-9 | IPR025829 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 193 | 227 | 5.76E-5 | IPR036875 |
| SUPERFAMILY | SSF54189 | Ribosomal proteins S24e, L23 and L15e | 847 | 1040 | 1.87E-92 | IPR012678 |
| SUPERFAMILY | SSF57850 | RING/U-box | 282 | 356 | 4.62E-12 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 201 | 252 | 3.7E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 373 | 3.3E-12 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 3.6E-32 | - |
| Gene3D | G3DSA:3.40.1120.10 | Ribosomal protein l15e | 846 | 1049 | 6.4E-115 | IPR024794 |
| SMART | SM01180 | DWNN_2 | 3 | 76 | 1.0E-39 | IPR014891 |
| SMART | SM01384 | Ribosomal_L15e_2 | 847 | 1038 | 1.9E-142 | IPR000439 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 76 | 30.181719 | IPR014891 |
| ProSitePatterns | PS01194 | Ribosomal protein L15e signature. | 891 | 914 | - | IPR020925 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 715 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_002304286.3 | E3 ubiquitin ligase PQT3-like isoform X2 [Populus trichocarpa] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834STN4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37290 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14902 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004045, Ah022334 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064150 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24185, Sbi_jg58979, Sbi_jg63638, Sbi_jg8023 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12014, Seu_jg23247 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010778, GOSA_00012900 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02403, Sgl07553, Sgl52404, Sgl57689 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006780, gene:ENSEOMG00000013503 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0023910, CQ.Regalona.r1.3BG0024800 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142350 |
| Apiaceae | Apium graveolens | 8 | Ag2G01789, Ag2G02408, Ag6G00082, Ag6G00084, Ag6G00085 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000990, scaffold000355G000020 |
| Arecaceae | Phoenix dactylifera | 7 | gene-LOC103698876, gene-LOC103699329, gene-LOC103712571 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.3223.V1.1, AsparagusV1_05.101.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G02991, Ftri7G29153 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17410.3, AT5G47430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000768m.g.v1.0, Thhalv10024408m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12130.v2.2, Sp7g16790.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g015090.2N, BniB05g019010.2N, BniB05g039610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0714, Ceq08G1293 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0813, Cgl08G1321 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1184s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g40340, gene.Thate04g22570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11321, nbisL1-mrna-11322 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1180 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00004168, Pov_00011628, Pov_00011632, Pov_00011634 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G36845, Lb4G22122 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1928, BH01.2311, CH01.2417 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0180990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0603690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024350, gene-QYE76_024395 |
| Poaceae | Oryza coarctata | 2 | Oco19G004650, Oco20G004540 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g55710.1, LOC_Os03g21700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G228100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405574, Pt_Chr0703421 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G009650, Chr13G015430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G478300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG039550, gene_TRIDC6BG046500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G256800.4, TraesCS6B02G268200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb047610_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48019 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13281, Zma_g16079 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.957, evm.TU.LG17.948 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g01660, gene.Posoc05g02820, gene.Posoc05g02840 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_14_RagTag.369, evm.TU.Scaffold_16_RagTag.351 ... |
| Rhizophoraceae | Carallia pectinifolia | 15 | nbisL1-mrna-17990, nbisL1-mrna-20383, nbisL1-mrna-20384 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-15732, nbisL1-mrna-1890, nbisL1-mrna-2592 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20177, nbisL1-mrna-21375, nbisL1-mrna-7114 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000003l.336, add.evm.TU.utg000022l.121 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00014490, Maker00014492, Maker00018615 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-16157, nbisL1-mrna-17098, nbisL1-mrna-17185 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10724, nbisL1-mrna-4692, nbisL1-mrna-6522 |
| Salicaceae | Populus euphratica | 3 | populus_peu03017, populus_peu16629, populus_peu33899 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607210, gene-LOC132631172, gene-LOC132644208 |
| Solanaceae | Solanum chilense | 3 | SOLCI001936000, SOLCI004210600, SOLCI007295500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002368, gene-LOC107013099, gene-LOC107026427 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.11379_chr02_+, gene_14066, gene_15568 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3823, TC09G0341 |
| Zosteraceae | Zostera marina | 2 | Zosma06g30150.v3.1, Zosma06g30160.v3.1 |