Basic Information
Locus ID:
nbisL1-mrna-17980
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002200F_pilon | 893665 | 896216 | - | nbisL1-mrna-17980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 34,610.70 Da | 40.15 | 70.19 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 52 | 311 | 1.5E-88 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 201 | 302 | 1.18E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 196 | 315 | 6.1E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 201 | 303 | 25.073723 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 45 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_021688573.1 | auxin-responsive protein IAA27-like [Hevea brasiliensis] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KL34 | Auxin-responsive protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology