Basic Information
Locus ID:
nbisL1-mrna-17960
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002200F_pilon | 710871 | 717741 | + | nbisL1-mrna-17960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 83,148.97 Da | 49.07 | 74.93 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 66 | 221 | 4.83908E-28 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 97 | 169 | 1.3E-7 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 28 | 371 | 4.0E-107 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 437 | 505 | 1.6E-5 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 374 | 432 | 1.7E-9 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 374 | 500 | 4.9E-36 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 224 | 371 | 2.35E-61 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 25 | 220 | 9.4E-48 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 59 | 215 | 1.3E-151 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 374 | 489 | 5.8E-26 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 28 | 369 | 1.3E-151 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_048234452.1 | nuclear poly(A) polymerase 4 [Ricinus communis] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MJA8 | polynucleotide adenylyltransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology