Basic Information
Locus ID:
nbisL1-mrna-17924
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 1703324 | 1703725 | - | nbisL1-mrna-17924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 12,892.65 Da | 56.34 | 75.13 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 53 | 110 | 1.2E-10 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 38 | 110 | 6.22E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 44 | 112 | 9.3E-11 | - |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 33 | 6.0 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 51 | 110 | 12.269648 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12570.1 | ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves. | 0 |
| RefSeq | XP_021666738.1 | E3 ubiquitin-protein ligase UPL5-like [Hevea brasiliensis] | 0 |
| Q9SU29 | E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JS98 | E3 ubiquitin-protein ligase UPL5 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21971 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17924 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.309 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17998 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11300 |