Basic Information
Locus ID:
nbisL1-mrna-17913
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
membrane protein At1g75140-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4402227 | 4404167 | - | nbisL1-mrna-17913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 71,988.83 Da | 38.49 | 85.06 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 302 | 4.89E-8 | IPR036322 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 57 | - | - |
| Coils | Coil | Coil | 66 | 89 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75140.1 | 0 | |
| RefSeq | XP_021646895.1 | uncharacterized membrane protein At1g75140-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9FRK5 | Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana OX=3702 GN=At1g75140 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2J472 | Putative membrane protein At1g75140-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18750, jg25871 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25336 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018145, Ah022557 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14664, Sbi_jg55428 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25989 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012472 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040131 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0008140, CQ.Regalona.r1.9AG0000160 ... |
| Apiaceae | Apium graveolens | 2 | Ag11G03121, Ag2G00283 |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G005620, COCNU_09G000640, COCNU_10G009600 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103695932, gene-LOC103696485, gene-LOC103697671 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.93.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G09480 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G19370.1, AT1G75140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009294m.g.v1.0, Thhalv10018268m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g17280.v2.2, Sp5g30270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g033980.2N, BniB06g048420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1615 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1741 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g22870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1314 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.555 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022122 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.98, BH06.104, CH06.96 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506510, gene-QOZ80_6BG0458910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0640570.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027601 |
| Poaceae | Oryza coarctata | 2 | Oco11G000810, Oco12G000690 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g02480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G011900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G000370, Chr11G024380, Chr22G006060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G093400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG065860, gene_TRIDC7AG004560 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G444200.1.cds1, TraesCS7A02G043600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb269050_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-40253, nbis-gene-41959, nbis-gene-41963 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29000, Zma_g31241 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2334, evm.TU.LG23.567 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g20150, gene.Posoc07g01710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1069 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9004 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16436 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15427 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.148 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17913 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20256 |
| Salicaceae | Populus euphratica | 3 | populus_peu07963, populus_peu14568, populus_peu30708 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627997 |
| Solanaceae | Solanum chilense | 1 | SOLCI001545500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015545 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31635_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2242 |