Basic Information
Locus ID:
nbisL1-mrna-17872
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 5617068 | 5618195 | - | nbisL1-mrna-17872 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 41,561.34 Da | 68.00 | 62.16 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 235 | 277 | 1.63185E-22 | - |
| Pfam | PF14369 | zinc-ribbon | 8 | 39 | 2.2E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 235 | 277 | 4.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 283 | 3.76E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 283 | 2.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 236 | 276 | 8.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 277 | 12.341748 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 329 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024466056.1 | E3 ubiquitin-protein ligase SIRP1 [Populus trichocarpa] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2Q2Q1 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38166 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30085460, pistato.v30089740 |
| Apiaceae | Apium graveolens | 1 | AgUnG01409 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G005370, COCNU_04G011700, COCNU_16G005370 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701051, gene-LOC103705352, gene-LOC103709650 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.1517.V1.1, AsparagusV1_04.470.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G11428, Ftri16G01532, Ftri2G00136 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G55530.1, AT3G13430.1, AT4G26400.2, AT5G56340.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10012351m.g.v1.0, Thhalv10013831m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g41140.v2.2, Sp3g11620.v2.2, Sp6g18170.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g035240.2N, BniB02g082410.2N, BniB05g011040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2480 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G2693, Cgl06G0406 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g17700 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g05750, gene.Thate07g12040 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2089, evm.TU.LG09.340 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025594, Pov_00041582 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3791, AH05.1983, AH08.559, BH01.4134, BH05.2108 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_3AG0210960, gene-QOZ80_3AG0246670 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0070130.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007808, gene-QYE76_013946, gene-QYE76_068236 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G012390, Oco06G014060, Oco09G012670, Oco10G012740 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g20870.1, LOC_Os03g59760.1, LOC_Os05g40980.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G036300, gene-BS78_01G368300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504454, Pt_Chr0504513 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G001880, Chr01G018180, Chr01G033650, Chr04G010270 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G494100, Tel4E01G316200, Tel5E01G740400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG045460, gene_TRIDC1BG051430 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1B02G316300.1.cds1, TraesCS1D02G305300.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb212150_P001, Zm00001eb291150_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15457, nbis-gene-16568, nbis-gene-25336 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g1300, Zma_g199, Zma_g2507, Zma_g28469, Zma_g3717 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1093, evm.TU.LG20.779 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g05990, gene.Posoc02g12830 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.399, evm.TU.Scaffold_7_RagTag.1769 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10346, nbisL1-mrna-19763 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16094, nbisL1-mrna-4416 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17658, nbisL1-mrna-5432 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.2, add.evm.TU.utg000012l.92 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003503, Maker00012119 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17872, nbisL1-mrna-19058, nbisL1-mrna-20135 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12450, nbisL1-mrna-20449, nbisL1-mrna-548 |
| Salicaceae | Populus euphratica | 5 | populus_peu04497, populus_peu16097, populus_peu19406 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626503 |
| Solanaceae | Solanum chilense | 1 | SOLCI000816700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008529 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5466 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25510.v3.1 |