Basic Information
Locus ID:
nbisL1-mrna-17840
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 1116123 | 1124734 | + | nbisL1-mrna-17840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 88,563.23 Da | 40.91 | 89.59 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 309 | 749 | 1.0E-45 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 47 | 146 | 1.9E-22 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 146 | 1.57E-24 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 307 | 789 | 4.51E-59 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 296 | 535 | 7.7E-68 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 9 | 160 | 6.7E-34 | - |
| SMART | SM00695 | dusp | 34 | 149 | 2.5E-25 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 15 | 146 | 15.169129 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 309 | 799 | 27.156881 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 310 | 325 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_021683725.1 | ubiquitin carboxyl-terminal hydrolase 5-like isoform X1 [Hevea brasiliensis] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LYE2 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology