Basic Information
Locus ID:
nbisL1-mrna-17839
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
UBC3
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000022F_pilon | 1585152 | 1587352 | - | nbisL1-mrna-17839 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 13,783.30 Da | 74.46 | 75.25 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 115 | 5.55464E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 50 | 9.4E-7 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 51 | 114 | 6.0E-21 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 120 | 1.88E-40 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 51 | 4.8E-16 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 52 | 122 | 4.0E-27 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 120 | 3.2E-32 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 120 | 24.319897 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_007153830.1 | hypothetical protein PHAVU_003G068500g [Phaseolus vulgaris] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | V7C975 | UBC core domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G068500g PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology