Basic Information
Locus ID:
nbisL1-mrna-1783
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 1741986 | 1743311 | + | nbisL1-mrna-1783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 48,712.16 Da | 59.12 | 72.52 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 188 | 231 | 6.8463E-17 | - |
| Pfam | PF13639 | Ring finger domain | 188 | 231 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 236 | 4.71E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 241 | 5.8E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 230 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 231 | 12.887609 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 441 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002534099.3 | RING-H2 finger protein ATL54 [Ricinus communis] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JII6 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology