Basic Information
Locus ID:
nbisL1-mrna-17829
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 30284721 | 30286826 | + | nbisL1-mrna-17829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 76,677.28 Da | 55.24 | 63.17 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 515 | 591 | 1.68419E-48 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 522 | 567 | 4.4E-11 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 82 | 265 | 1.4E-55 | IPR025610 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 44 | 53 | 2.88E-5 | - |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 521 | 588 | 7.33E-19 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 510 | 596 | 3.1E-18 | IPR036638 |
| SMART | SM00353 | finulus | 524 | 573 | 1.8E-17 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 518 | 567 | 17.745609 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 60 | - | - |
| Coils | Coil | Coil | 564 | 598 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_021664832.1 | transcription factor MYC2-like [Hevea brasiliensis] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KBK1 | Uncharacterized protein MANES_17G016000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology